PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DL_A54ED44C9.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WRKY
Protein Properties Length: 394aa    MW: 42280.9 Da    PI: 10.6164
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DL_A54ED44C9.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.44.7e-31326384259
                            --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                             D+++WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp ++++tYeg+Hnh+
  Traes_5DL_A54ED44C9.2 326 ADEFSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDPAMLIVTYEGDHNHN 384
                            69*************************988****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105334.3E-16279323IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.4E-33313385IPR003657WRKY domain
PROSITE profilePS5081129.953320386IPR003657WRKY domain
SuperFamilySSF1182901.28E-26323385IPR003657WRKY domain
SMARTSM007744.4E-38325385IPR003657WRKY domain
PfamPF031061.7E-26327383IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MDGMVESNRE AVQSCHKVLD LLSNPHGQLV PHKDLVEATG AAVAKFGSLA SKISSGNGRQ  60
GHARFRQRIK KPMPLFDSNL FRDSPASASA ADAAAAAPKT SSPGPSTGLQ LFPRYQQMEA  120
SSSKDPVRIP AAQFPQRMVV ENPSVGSNGP PLQLVQPVSV APPAGTPAPA LPAAHLHFIQ  180
QQQSYQRFQL MHQMKLQSEM MKRGGHGDHQ GGSTGAGKGV NLKFDGSNCT GSSSRSFLTS  240
LSMEGSMASL DGSRSSRPFQ LVSGSQTSST PELGLMQQRR RCAGKEDGSG RCATGSRCHC  300
AKKRKLRIRR SIKVPAISNK VADIPADEFS WRKYGQKPIK GSPHPRGYYK CSSVRGCPAR  360
KHVERCVDDP AMLIVTYEGD HNHNRAAAAQ PQPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-193233841272WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ8404080.0DQ840408.1 Hordeum vulgare subsp. vulgare WRKY transcription factor 9 (WRKY9) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632919.10.0PREDICTED: protein WRKY1
SwissprotQ32SG40.0WRKY1_MAIZE; Protein WRKY1
TrEMBLW5FWX90.0W5FWX9_WHEAT; Uncharacterized protein
STRINGMLOC_76441.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102503242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.13e-54WRKY DNA-binding protein 21
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]